STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccoN[C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; Belongs to the heme-copper respiratory oxidase family. (536 aa)    
Predicted Functional Partners:
ccoP
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
 0.999
ccoO
[C] COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit.
 0.999
EDZ47311.1
Cytochrome c oxidase, cbb3-type, CcoQ subunit, putative; [O] COG4736 Cbb3-type cytochrome oxidase, subunit 3.
 
 
 0.998
ccoG
Cytochrome c oxidase accessory protein CcoG; [C] COG0348 Polyferredoxin.
 
  
 0.978
RBY4I_484
FixH; [P] COG5456 Predicted integral membrane protein linked to a cation pump.
 
 
 0.977
fdhB
Formate dehydrogenase, beta subunit; [C] COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC.
   
 
 0.956
EDZ47575.1
Cytochrome c family protein.
  
 0.953
EDZ46138.1
Cytochrome c, class I; [C] COG3474 Cytochrome c2.
  
 0.946
EDZ46186.1
[NT] COG0840 Methyl-accepting chemotaxis protein.
  
 0.941
soxD_2
[C] COG3474 Cytochrome c2.
  
 0.940
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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