STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_463Conserved hypothetical protein. (333 aa)    
Predicted Functional Partners:
EDZ48244.1
Conserved hypothetical protein; [TQ] COG3916 N-acyl-L-homoserine lactone synthetase; Belongs to the autoinducer synthase family.
  
     0.708
EDZ47942.1
Putative transglycolase; [M] COG2951 Membrane-bound lytic murein transglycosylase B.
       0.658
EDZ46009.1
[R] COG3173 Predicted aminoglycoside phosphotransferase.
  
     0.631
EDZ47111.1
Conserved hypothetical protein.
 
     0.613
RBY4I_25
PimS2 protein; [C] COG0644 Dehydrogenases (flavoproteins).
  
     0.494
EDZ47606.1
GumN; [S] COG3735 Uncharacterized protein conserved in bacteria.
  
     0.489
EDZ46144.1
Conserved hypothetical protein.
  
     0.465
EDZ46335.1
Cell division protease FtsH, putative; [O] COG0465 ATP-dependent Zn proteases; Belongs to the AAA ATPase family.
  
     0.462
EDZ46872.1
ATP-dependent Zn protease, putative; [O] COG0464 ATPases of the AAA+ class.
  
     0.457
EDZ47393.1
Conserved hypothetical protein.
  
     0.449
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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