STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_47DctQ; [G] COG3090 TRAP-type C4-dicarboxylate transport system, small permease component. (182 aa)    
Predicted Functional Partners:
RBY4I_59
DctM; [R] COG4666 TRAP-type uncharacterized transport system, fused permease components.
 
  0.979
RBY4I_49
DctP; [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
 
  0.956
RBY4I_74
[E] COG1984 Allophanate hydrolase subunit 2.
       0.785
RBY4I_78
[E] COG2049 Allophanate hydrolase subunit 1.
       0.785
pxpA
LamB/YcsF; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
       0.775
EDZ46059.1
Tripartite ATP-independent periplasmic transporter, DctQ component; [Q] COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
     
  0.742
EDZ48493.1
Conserved hypothetical protein.
     
  0.742
RBY4I_805
Trap dicarboxylate transporter, dctq subunit; [Q] COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
     
  0.740
RBY4I_50
DctQ; [Q] COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
     
  0.705
EDZ46190.1
Trap dicarboxylate transporter, dctm subunit; [R] COG4666 TRAP-type uncharacterized transport system, fused permease components.
  
  0.660
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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