STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_478Transporter, Tim44 family; [S] COG4395 Uncharacterized protein conserved in bacteria. (214 aa)    
Predicted Functional Partners:
EDZ46154.1
MltA/3D domain protein; [M] COG2821 Membrane-bound lytic murein transglycosylase.
       0.831
EDZ48382.1
[S] COG3820 Uncharacterized protein conserved in bacteria.
  
     0.773
secB
Protein-export chaperone SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
 
     0.736
atpF
ATP synthase B' chain; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.734
EDZ46300.1
[S] COG5465 Uncharacterized conserved protein.
  
     0.720
EDZ46484.1
[S] COG3814 Uncharacterized protein conserved in bacteria.
  
     0.719
EDZ47349.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.714
EDZ47195.1
[C] COG3761 NADH:ubiquinone oxidoreductase 17.2 kD subunit.
  
     0.668
yidC
60 kDa inner membrane insertion protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
  
     0.666
RBY4I_499
Hydrolase; [R] COG1073 Hydrolases of the alpha/beta superfamily.
  
     0.666
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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