STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_479Regulatory protein GntR, HTH; [K] COG2186 Transcriptional regulators. (242 aa)    
Predicted Functional Partners:
EDZ48163.1
[S] COG5588 Uncharacterized conserved protein.
 
     0.883
RBY4I_797
Conserved hypothetical protein; [S] COG5486 Predicted metal-binding integral membrane protein.
 
     0.877
EDZ45978.1
Conserved hypothetical protein.
       0.639
EDZ48635.1
Reductive dehalogenase subfamily, putative; [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
  
  0.597
EDZ48146.1
[E] COG0404 Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
 
     0.533
EDZ46994.1
[S] COG5588 Uncharacterized conserved protein.
 
     0.471
EDZ48662.1
KR domain family; [IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase.
  
 
 0.469
EDZ47876.1
[S] COG5486 Predicted metal-binding integral membrane protein.
 
     0.468
EDZ46983.1
Transcriptional regulator, GntR family; [K] COG2188 Transcriptional regulators.
  
    0.458
EDZ44988.1
Rieske (2Fe-2S) domain protein; [PR] COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit.
 
  
  0.450
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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