STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RBY4I_484FixH; [P] COG5456 Predicted integral membrane protein linked to a cation pump. (154 aa)    
Predicted Functional Partners:
ccoG
Cytochrome c oxidase accessory protein CcoG; [C] COG0348 Polyferredoxin.
 
  
 0.986
ccoP
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
 
 0.977
ccoN
[C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; Belongs to the heme-copper respiratory oxidase family.
 
 
 0.977
ccoS
Cytochrome oxidase maturation protein, cbb3-type; [P] COG3197 Uncharacterized protein, possibly involved in nitrogen fixation.
 
  
 0.959
ccoO
[C] COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit.
 
 
 0.959
EDZ47311.1
Cytochrome c oxidase, cbb3-type, CcoQ subunit, putative; [O] COG4736 Cbb3-type cytochrome oxidase, subunit 3.
 
  
 0.923
EDZ48232.1
Copper-translocating P-type ATPase; [P] COG2217 Cation transport ATPase.
 
   
 0.923
EDZ46138.1
Cytochrome c, class I; [C] COG3474 Cytochrome c2.
   
   0.847
EDZ46791.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
 
 0.807
EDZ48239.1
[C] COG2857 Cytochrome c1.
    
 
 0.756
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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