STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RBY4I_496Conserved hypothetical protein; [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily. (286 aa)    
Predicted Functional Partners:
RBY4I_886
Integral membrane protein DUF6; [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
  
     0.746
EDZ46828.1
Conserved hypothetical protein; [S] COG5480 Predicted integral membrane protein.
       0.581
uppS
Undecaprenyl pyrophosphate synthetase 1; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
 
  0.552
RBY4I_93
ABC transporter, ATP-binding protein; [P] COG1122 ABC-type cobalt transport system, ATPase component.
    
  0.508
EDZ45795.1
[R] COG1741 Pirin-related protein; Belongs to the pirin family.
       0.474
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
     
  0.445
EDZ45857.1
Integral membrane protein DUF6; [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
     0.418
betC
Choline-sulfatase; [P] COG3119 Arylsulfatase A and related enzymes.
    
  0.412
EDZ46738.1
Sulfatase; [P] COG3119 Arylsulfatase A and related enzymes.
    
  0.412
EDZ47712.1
[P] COG3119 Arylsulfatase A and related enzymes.
    
  0.412
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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