STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_499Hydrolase; [R] COG1073 Hydrolases of the alpha/beta superfamily. (217 aa)    
Predicted Functional Partners:
RBY4I_478
Transporter, Tim44 family; [S] COG4395 Uncharacterized protein conserved in bacteria.
  
     0.666
bamD
DNA uptake lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
     0.665
EDZ48382.1
[S] COG3820 Uncharacterized protein conserved in bacteria.
  
     0.653
EDZ46020.1
HD domain protein; [R] COG1896 Predicted hydrolases of HD superfamily.
       0.629
EDZ48416.1
Transcriptional regulator, BadM/Rrf2 family; [K] COG1959 Predicted transcriptional regulator.
       0.597
sufB
FeS assembly protein SufB; [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
     
 0.581
yidC
60 kDa inner membrane insertion protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
  
     0.579
EDZ47278.1
Hypothetical protein.
       0.576
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
 
    0.567
rpsU
[J] COG0828 Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
     0.546
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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