STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RBY4I_5[V] COG1132 ABC-type multidrug transport system, ATPase and permease components. (580 aa)    
Predicted Functional Partners:
EDZ48662.1
KR domain family; [IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase.
  
 0.924
RBY4I_283
ABC transporter, ATP-binding/permease protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
  
0.853
RBY4I_93
ABC transporter, ATP-binding protein; [P] COG1122 ABC-type cobalt transport system, ATPase component.
    
 0.812
EDZ46679.1
Efflux ABC transporter, ATP-binding protein; [V] COG1131 ABC-type multidrug transport system, ATPase component.
 
  0.802
RBY4I_25
PimS2 protein; [C] COG0644 Dehydrogenases (flavoproteins).
 
   
 0.781
qhpB
Quinohemoprotein amine dehydrogenase, subunit beta.
       0.773
RBY4I_22
Radical SAM domain protein; [R] COG0641 Arylsulfatase regulator (Fe-S oxidoreductase).
 
     0.768
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
  0.747
EDZ47930.1
Protein secretion ABC efflux system, permease and ATP-binding protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
   
  0.746
nosF
ABC transporter, ATP-binding protein NosF; [G] COG1129 ABC-type sugar transport system, ATPase component.
  
  0.728
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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