STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
RBY4I_500Glycosyltransferase, group 1; [M] COG0438 Glycosyltransferase. (362 aa)    
Predicted Functional Partners:
RBY4I_323
Glycosyltransferase family 28 C-terminal domain; [M] COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase.
 
     0.959
EDZ46945.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.956
redA
Membrane-anchored protein; [R] COG4671 Predicted glycosyl transferase.
 
     0.956
EDZ46866.1
Glycosyl transferase, group 1; [M] COG0438 Glycosyltransferase.
 
     0.949
EDZ47730.1
Phosphoglycerate mutase; [G] COG0406 Fructose-2,6-bisphosphatase.
 
     0.927
RBY4I_796
Cyclic nucleotide-binding domain protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
 
 0.802
EDZ48429.1
ABC transporter, permease protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
 
  0.793
EDZ46539.1
Mechanosensitive ion channel family protein; [M] COG3264 Small-conductance mechanosensitive channel.
 
     0.774
EDZ47052.1
Extracellular solute-binding protein, family 5; [E] COG4166 ABC-type oligopeptide transport system, periplasmic component.
  
     0.773
EDZ46561.1
[EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
     0.733
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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