STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_507Outer membrane protein, OmpA/MotB family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (694 aa)    
Predicted Functional Partners:
RBY4I_205
OmpA family protein; [N] COG1360 Flagellar motor protein.
  
 0.895
EDZ46168.1
OmpA/MotB; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
 0.754
EDZ47510.1
Putative outer membrane protein; [M] COG3637 Opacity protein and related surface antigens.
  
  0.749
EDZ46507.1
Polysaccharide biosynthesis/export protein; [M] COG0797 Lipoproteins.
   
  0.742
RBY4I_325
OmpA/MotB; [N] COG1360 Flagellar motor protein.
   
 0.738
EDZ48488.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
   
  0.676
RBY4I_421
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
   
  0.675
ompW
[M] COG3047 Outer membrane protein W.
     
 0.652
EDZ47802.1
Peptidase C14, caspase catalytic subunit p20; [R] COG0790 FOG: TPR repeat, SEL1 subfamily.
 
 
 0.640
EDZ46102.1
Outer membrane porin.
   
  0.636
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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