STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_52FHA domain containing protein. (46 aa)    
Predicted Functional Partners:
cyaF_1
[T] COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain).
  
 0.832
RBY4I_444
Adenylate cyclase Cya3; [R] COG0457 FOG: TPR repeat.
  
 0.832
sucA
[C] COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes.
    
 
 0.821
RBY4I_10
[T] COG0631 Serine/threonine protein phosphatase.
  
 0.811
RBY4I_93
ABC transporter, ATP-binding protein; [P] COG1122 ABC-type cobalt transport system, ATPase component.
    
  0.798
EDZ46648.1
[T] COG0642 Signal transduction histidine kinase.
  
 
 0.797
EDZ45802.1
[T] COG0642 Signal transduction histidine kinase.
  
 
 0.791
EDZ48653.1
Virulence sensor protein BvgS; [T] COG0642 Signal transduction histidine kinase.
  
 
 0.791
RBY4I_541
Sensory box sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.
  
 
 0.791
EDZ48440.1
Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.
  
 
 0.780
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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