STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_522Conserved hypothetical protein. (159 aa)    
Predicted Functional Partners:
EDZ46064.1
Conserved hypothetical protein.
 
    0.940
EDZ47867.1
Insulin-cleaving metalloproteinase outer membrane protein; [P] COG3487 Uncharacterized iron-regulated protein.
 
     0.868
EDZ48119.1
Hypothetical protein.
       0.768
EDZ48086.1
Conserved hypothetical protein; [J] COG0228 Ribosomal protein S16.
 
     0.712
RBY4I_776
Twin-arginine translocation pathway signal; [S] COG3490 Uncharacterized protein conserved in bacteria.
 
     0.648
EDZ45959.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.529
EDZ47351.1
[C] COG3488 Predicted thiol oxidoreductase.
 
     0.491
RBY4I_999
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.461
EDZ47601.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.449
EDZ48197.1
Conserved hypothetical protein.
  
     0.401
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.