rnc protein (Rhodobacterales bacterium Y4I) - STRING interaction network

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rnc

Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (225 aa)

Predicted Functional Partners:

lepB

0.970

rpoC

0.953

hrpB

0.933

rplS

0.919

era

0.912

rpsO

0.903

prfB

0.900

deaD

0.896

rhlE

0.896

rpsI

0.895

Your Current Organism:

Rhodobacterales bacterium Y4I

NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
deaD	hrpB	RBY4I_1196	RBY4I_1893	RNA helicase DeaD; [LKJ] COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.	ATP-dependent helicase HrpB; [LKJ] COG0513 Superfamily II DNA and RNA helicases.	0.937
deaD	prfB	RBY4I_1196	RBY4I_3690	RNA helicase DeaD; [LKJ] COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.	Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	0.803
deaD	rnc	RBY4I_1196	RBY4I_523	RNA helicase DeaD; [LKJ] COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.896
deaD	rplS	RBY4I_1196	RBY4I_3205	RNA helicase DeaD; [LKJ] COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.731
deaD	rpoC	RBY4I_1196	RBY4I_3474	RNA helicase DeaD; [LKJ] COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.848
deaD	rpsI	RBY4I_1196	RBY4I_3179	RNA helicase DeaD; [LKJ] COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.	[J] COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.588
deaD	rpsO	RBY4I_1196	RBY4I_1944	RNA helicase DeaD; [LKJ] COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.920
era	lepB	RBY4I_2286	RBY4I_2225	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	[U] COG0681 Signal peptidase I; Belongs to the peptidase S26 family.	0.534
era	rnc	RBY4I_2286	RBY4I_523	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.912
era	rplS	RBY4I_2286	RBY4I_3205	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.485
era	rpsI	RBY4I_2286	RBY4I_3179	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	[J] COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.777
era	rpsO	RBY4I_2286	RBY4I_1944	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.670
hrpB	deaD	RBY4I_1893	RBY4I_1196	ATP-dependent helicase HrpB; [LKJ] COG0513 Superfamily II DNA and RNA helicases.	RNA helicase DeaD; [LKJ] COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.	0.937
hrpB	prfB	RBY4I_1893	RBY4I_3690	ATP-dependent helicase HrpB; [LKJ] COG0513 Superfamily II DNA and RNA helicases.	Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	0.644
hrpB	rhlE	RBY4I_1893	RBY4I_2934	ATP-dependent helicase HrpB; [LKJ] COG0513 Superfamily II DNA and RNA helicases.	[LKJ] COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.	0.938
hrpB	rnc	RBY4I_1893	RBY4I_523	ATP-dependent helicase HrpB; [LKJ] COG0513 Superfamily II DNA and RNA helicases.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.933
hrpB	rplS	RBY4I_1893	RBY4I_3205	ATP-dependent helicase HrpB; [LKJ] COG0513 Superfamily II DNA and RNA helicases.	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.702
hrpB	rpoC	RBY4I_1893	RBY4I_3474	ATP-dependent helicase HrpB; [LKJ] COG0513 Superfamily II DNA and RNA helicases.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.892
hrpB	rpsI	RBY4I_1893	RBY4I_3179	ATP-dependent helicase HrpB; [LKJ] COG0513 Superfamily II DNA and RNA helicases.	[J] COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.705
hrpB	rpsO	RBY4I_1893	RBY4I_1944	ATP-dependent helicase HrpB; [LKJ] COG0513 Superfamily II DNA and RNA helicases.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.948

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