STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
RBY4I_528Gamma-glutamylputrescine oxidoreductase; [E] COG0665 Glycine/D-amino acid oxidases (deaminating). (446 aa)    
Predicted Functional Partners:
RBY4I_965
[E] COG0174 Glutamine synthetase.
 
 
  0.919
RBY4I_402
Sarcosine oxidase, alpha subunit family; [R] COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; Belongs to the GcvT family.
 
 0.856
EDZ45988.1
Sarcosine oxidase, alpha subunit family; [E] COG0404 Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
 
 0.851
EDZ47679.1
Sarcosine oxidase, alpha subunit family; [R] COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; Belongs to the GcvT family.
 
 0.851
EDZ47438.1
[E] COG0174 Glutamine synthetase.
 
 
  0.849
EDZ48643.1
Hypothetical protein; [C] COG2218 Formylmethanofuran dehydrogenase subunit C; Conserved region in glutamate synthase family.
  
 
 0.769
RBY4I_995
Aminotransferase class-III; [E] COG4992 Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
  0.765
gcvP_1
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.711
gcvP_2
[E] COG1003 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain.
   
 
 0.711
EDZ48608.1
[F] COG0518 GMP synthase - Glutamine amidotransferase domain.
 
     0.704
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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