Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RBY4I_529[EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; overlaps another CDS with the same product name. (318 aa)    
Predicted Functional Partners:
EDZ46673.1
Peptide/nickel/opine uptake family ABC transporter, ATP-binding protein; [P] COG1122 ABC-type cobalt transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
  0.987
RBY4I_271
Binding-protein-dependent transport systems inner membrane component; [V] COG4171 ABC-type antimicrobial peptide transport system, permease component; overlaps another CDS with the same product name.
  0.986
EDZ47458.1
Twin-arginine translocation pathway signal; [E] COG0747 ABC-type dipeptide transport system, periplasmic component.
 
  0.980
RBY4I_661
Peptide/opine/nickel uptake family ABC transporter, permease protein; [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  0.947
EDZ44929.1
[EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  0.937
EDZ48317.1
Peptide/nickel/opine uptake family ABC transporter, permease protein; [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  0.935
EDZ48746.1
Oligopeptide/dipeptide ABC transporter, permease protein; [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  0.916
EDZ47581.1
ABC transporter, nucleotide binding/ATPase protein; [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.
  0.910
EDZ48690.1
[EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  0.908
EDZ44944.1
Dipeptide ABC transporter, ATP-binding protein; [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.
 0.906
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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