STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
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experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RBY4I_53[T] COG0642 Signal transduction histidine kinase. (480 aa)    
Predicted Functional Partners:
RBY4I_73
Two component transcriptional regulator, winged helix family; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
 0.974
RBY4I_1
Extracellular solute-binding protein, family 1; [G] COG1653 ABC-type sugar transport system, periplasmic component.
 
  
  0.912
EDZ46376.1
Dehydrogenase E1 component family; [C] COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit.
    
 0.888
EDZ46648.1
[T] COG0642 Signal transduction histidine kinase.
 
 
 0.871
EDZ46337.1
HWE histidine kinase family; [T] COG2202 FOG: PAS/PAC domain.
   
 0.858
EDZ48028.1
MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; [T] COG2202 FOG: PAS/PAC domain.
   
 0.852
EDZ48440.1
Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.
  
 0.820
EDZ48604.1
[T] COG3920 Signal transduction histidine kinase.
  
 0.802
RBY4I_11
[G] COG1175 ABC-type sugar transport systems, permease components; overlaps another CDS with the same product name.
 
     0.744
RBY4I_34
Binding-protein-dependent transport systems inner membrane component; [G] COG0395 ABC-type sugar transport system, permease component; overlaps another CDS with the same product name.
 
     0.729
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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