STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_542ABC transporter, periplasmic substrate-binding protein; [E] COG0747 ABC-type dipeptide transport system, periplasmic component. (571 aa)    
Predicted Functional Partners:
EDZ47809.1
Binding-protein-dependent transport systems inner membrane component; [R] COG4239 ABC-type uncharacterized transport system, permease component.
 
 
 0.902
EDZ46303.1
[EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
 0.872
yejF
Oligopeptide/dipeptide uptake family ABC transporter, ATP-binding protein; [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.
 
 
 0.810
EDZ46267.1
Peptide/opine/nickel uptake family ABC transporter, ATP-binding protein; [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.
 
 
 0.626
RBY4I_93
ABC transporter, ATP-binding protein; [P] COG1122 ABC-type cobalt transport system, ATPase component.
  
 
 0.597
RBY4I_246
Hypothetical protein.
       0.570
EDZ47617.1
Transcriptional regulator/arsenate reductase; [K] COG0640 Predicted transcriptional regulators; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
       0.570
EDZ47581.1
ABC transporter, nucleotide binding/ATPase protein; [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.
 
 
 0.569
RBY4I_869
Oligopeptide/dipeptide ABC transporter, permease protein; [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.534
EDZ47947.1
Major intrinsic protein; [G] COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family); Belongs to the MIP/aquaporin (TC 1.A.8) family.
     
 0.530
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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