STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_548Transcriptional regulator, AraC family; [K] COG2207 AraC-type DNA-binding domain-containing proteins. (334 aa)    
Predicted Functional Partners:
RBY4I_578
Sarcosine oxidase, delta subunit, heterotetrameric; [E] COG4311 Sarcosine oxidase delta subunit.
 
    0.626
EDZ47679.1
Sarcosine oxidase, alpha subunit family; [R] COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; Belongs to the GcvT family.
 
     0.525
RBY4I_551
[E] COG3200 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase.
       0.522
rpoD
Sigma-70 region 3 family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
   0.486
metF_1
[E] COG0685 5,10-methylenetetrahydrofolate reductase.
  
     0.480
EDZ46384.1
Glycine cleavage T-protein (aminomethyl transferase); [E] COG0665 Glycine/D-amino acid oxidases (deaminating); Belongs to the GcvT family.
  
     0.465
EDZ46040.1
Sarcosine oxidase subunit beta; [R] COG0579 Predicted dehydrogenase.
  
     0.442
RBY4I_938
[E] COG4583 Sarcosine oxidase gamma subunit.
 
    0.410
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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