STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_549XorII very-short-patch-repair endonuclease; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination. (137 aa)    
Predicted Functional Partners:
EDZ46609.1
Modification methylase XorII; [L] COG0270 Site-specific DNA methylase.
   
 0.837
EDZ46520.1
Conserved hypothetical protein.
       0.795
EDZ48752.1
DNA-cytosine methyltransferase; [L] COG0270 Site-specific DNA methylase.
 
   
 0.780
mutL
DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
   
 
 0.772
EDZ48465.1
DNA-cytosine methyltransferase; [L] COG0270 Site-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
 
   
 0.768
EDZ48482.1
Endonuclease; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.537
EDZ47126.1
Conserved hypothetical protein.
 
     0.474
RBY4I_487
Conserved hypothetical protein.
 
     0.457
EDZ48354.1
Hypothetical protein.
       0.450
EDZ48624.1
Conserved hypothetical protein.
 
     0.437
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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