STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_55Aminotransferase class-III; [E] COG4992 Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (457 aa)    
Predicted Functional Partners:
eutD
Ectoine utilization protein EutD; [E] COG0006 Xaa-Pro aminopeptidase.
 
     0.789
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
 
  
 0.774
EDZ48643.1
Hypothetical protein; [C] COG2218 Formylmethanofuran dehydrogenase subunit C; Conserved region in glutamate synthase family.
     
 0.757
bioD
Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
  
 
 0.744
EDZ48662.1
KR domain family; [IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase.
    
 0.743
eutE
Ectoine utilization protein EutE; [R] COG3608 Predicted deacylase.
 
  
  0.686
gabD_2
[C] COG1012 NAD-dependent aldehyde dehydrogenases.
 
  
  0.658
gabDc
Succinate-semialdehyde dehydrogenase protein; [C] COG1012 NAD-dependent aldehyde dehydrogenases.
    
  0.606
eutA
Ectoine utilization protein EutA; [Q] COG3473 Maleate cis-trans isomerase.
 
     0.571
EDZ47359.1
Luciferase-like monooxygenase family; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
    
 0.538
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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