STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RBY4I_552Lysine 2,3-aminomutase YodO family protein; [E] COG1509 Lysine 2,3-aminomutase. (360 aa)    
Predicted Functional Partners:
EDZ46069.1
D-alanine--D-alanine ligase domain protein; [M] COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes.
     0.981
EDZ46690.1
D-alanine--D-alanine ligase domain protein; [M] COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes.
 
     0.836
EDZ47057.1
[BQ] COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein.
 
  
 0.771
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
     
 0.747
sdh
Saccharopine dehydrogenase; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
    
  0.737
EDZ46337.1
HWE histidine kinase family; [T] COG2202 FOG: PAS/PAC domain.
   
   0.735
EDZ48028.1
MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; [T] COG2202 FOG: PAS/PAC domain.
   
   0.735
cheR
Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
    
   0.731
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
    
 0.636
EDZ46385.1
5-methyltetrahydrofolate--homocysteine S-methyltransferase; [I] COG2185 Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding).
    
 0.616
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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