STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_565Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (140 aa)    
Predicted Functional Partners:
RBY4I_994
[S] COG3159 Uncharacterized protein conserved in bacteria.
  
     0.626
lysS
[J] COG1384 Lysyl-tRNA synthetase (class I); Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.623
EDZ47349.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.611
RBY4I_363
[D] COG2919 Septum formation initiator.
  
     0.603
EDZ47284.1
[O] COG1076 DnaJ-domain-containing proteins 1.
  
     0.570
EDZ46409.1
HemY domain protein; [H] COG3071 Uncharacterized enzyme of heme biosynthesis.
  
     0.549
RBY4I_892
[T] COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
  
     0.503
EDZ46938.1
Transcriptional regulator, MarR family; [K] COG1846 Transcriptional regulators.
  
     0.471
EDZ48356.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.468
EDZ46380.1
[L] COG1466 DNA polymerase III, delta subunit.
  
     0.460
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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