STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_568Glycine betaine/proline ABC transporter, permease protein; [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component. (679 aa)    
Predicted Functional Partners:
proV
Glycine betaine/L-proline ABC transporter, ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components.
 
 0.999
EDZ48595.1
Glycine betaine/proline ABC transporter, periplasmic substrate-binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.
 
 
 0.999
EDZ48647.1
Glycine betaine/proline ABC transporter, periplasmic substrate-binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.
 
 
 0.993
EDZ45895.1
Polar amino acid uptake family ABC transporter, permease protein; [E] COG0765 ABC-type amino acid transport system, permease component.
  
  
  0.930
EDZ46731.1
Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; [E] COG0765 ABC-type amino acid transport system, permease component.
     
 0.919
EDZ46145.1
Membrane protein; [Q] COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
     
  0.917
EDZ46559.1
Polar amino acid ABC transporter, inner membrane subunit; [E] COG0765 ABC-type amino acid transport system, permease component.
     
  0.917
EDZ46932.1
[R] COG0795 Predicted permeases; overlaps another CDS with the same product name.
     
  0.917
phnD
[P] COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component.
     
  0.917
EDZ48118.1
Efflux ABC transporter, permease protein; [V] COG0842 ABC-type multidrug transport system, permease component.
     
  0.917
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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