STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RBY4I_57Quinohemoprotein amine dehydrogenase, alpha subunit. (507 aa)    
Predicted Functional Partners:
qhpC
Quinohemoprotein amine dehydrogenase gamma subunit.
   
 
 0.971
soxD_2
[C] COG3474 Cytochrome c2.
   
 0.910
qhpB
Quinohemoprotein amine dehydrogenase, subunit beta.
  
  0.884
petA
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 0.882
EDZ46789.1
Conserved hypothetical protein; [R] COG2319 FOG: WD40 repeat.
  
  0.847
EDZ48458.1
Yvtn beta-propeller repeat family protein; [S] COG3391 Uncharacterized conserved protein.
  
  0.847
exaA
Quinoprotein alcohol dehydrogenase; [S] COG1520 FOG: WD40-like repeat.
   
 0.842
EDZ47467.1
Cytochrome B/c1; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 0.820
ccoO
[C] COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit.
  
 0.798
fdhB
Formate dehydrogenase, beta subunit; [C] COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC.
   
 
 0.796
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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