STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_571Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (94 aa)    
Predicted Functional Partners:
EDZ46622.1
HAD-superfamily hydrolase subfamily IA, variant 3; [R] COG0546 Predicted phosphatases.
       0.699
EDZ46660.1
Response regulator PleD; [T] COG2199 FOG: GGDEF domain.
       0.659
RBY4I_762
Conserved hypothetical protein.
  
     0.531
EDZ47141.1
Conserved hypothetical protein.
  
     0.512
RBY4I_831
Conserved hypothetical protein; [S] COG3164 Predicted membrane protein.
  
     0.483
RBY4I_994
[S] COG3159 Uncharacterized protein conserved in bacteria.
  
     0.474
EDZ47568.1
Conserved hypothetical protein.
  
     0.467
RBY4I_394
Conserved hypothetical protein.
  
     0.456
EDZ46662.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.445
cpoB
Hypothetical protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
  
     0.418
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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