STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_572Transmembrane amino acid efflux protein; [E] COG1280 Putative threonine efflux protein. (206 aa)    
Predicted Functional Partners:
udgA
[L] COG1573 Uracil-DNA glycosylase.
      0.910
EDZ46381.1
Ser/Thr protein phosphatase family protein; [R] COG2129 Predicted phosphoesterases, related to the Icc protein.
       0.773
pyrB
[E] COG0078 Ornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
       0.514
EDZ46038.1
Conserved hypothetical protein.
       0.495
EDZ46925.1
Conserved hypothetical protein.
       0.495
RBY4I_257
Dihydroorotase; [F] COG1001 Adenine deaminase.
       0.495
plsY
Conserved hypothetical protein TIGR00023; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.
       0.495
RBY4I_856
LysE family transport protein; [E] COG1280 Putative threonine efflux protein.
  
     0.446
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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