STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_576Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (337 aa)    
Predicted Functional Partners:
EDZ46704.1
Conserved hypothetical protein.
  
 
   0.787
EDZ46004.1
Conserved hypothetical protein.
  
 0.780
RBY4I_420
core-2/I-branching enzyme family protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.771
RBY4I_379
Conserved hypothetical protein.
  
     0.769
EDZ47183.1
Peptidoglycan-binding domain 1.
  
     0.753
RBY4I_859
Conserved hypothetical protein.
  
     0.753
EDZ48522.1
Conserved hypothetical protein.
  
     0.751
RBY4I_461
Conserved hypothetical protein.
  
     0.745
EDZ46255.1
OmpA/MotB; [P] COG0226 ABC-type phosphate transport system, periplasmic component.
 
 
 0.743
EDZ47874.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.742
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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