STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hpcE2-hydroxyhepta-2,4-diene-1,7-dioate isomerase/5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate decarboxy; [R] COG3970 Fumarylacetoacetate (FAA) hydrolase family protein. (282 aa)    
Predicted Functional Partners:
RBY4I_796
Cyclic nucleotide-binding domain protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
    
  0.723
hpaH
2-oxo-hepta-3-ene-1,7-dioic acid hydratase; [Q] COG3971 2-keto-4-pentenoate hydratase.
  
 
 0.668
hmgA
[Q] COG3508 Homogentisate 1,2-dioxygenase.
  
  
 0.615
hpcD
[E] COG3232 5-carboxymethyl-2-hydroxymuconate isomerase.
  
 
 0.613
EDZ48085.1
Fumarylacetoacetate hydrolase domain-containing protein 1; [Q] COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
  
  
 
0.590
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
  
 
 0.578
glcF
Glycolate oxidase, iron-sulfur subunit; [C] COG0247 Fe-S oxidoreductase.
    
  0.561
EDZ45794.1
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; [HE] COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases.
    
  0.551
glcE
Glycolate oxidase, GlcE subunit; [C] COG0277 FAD/FMN-containing dehydrogenases.
    
  0.548
allA
[F] COG3194 Ureidoglycolate hydrolase.
     
  0.544
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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