STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RBY4I_582[ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; Belongs to the bacterial solute-binding protein 3 family. (258 aa)    
Predicted Functional Partners:
EDZ46559.1
Polar amino acid ABC transporter, inner membrane subunit; [E] COG0765 ABC-type amino acid transport system, permease component.
 
  0.999
EDZ47615.1
[P] COG1135 ABC-type metal ion transport system, ATPase component.
 
  0.996
EDZ47936.1
[E] COG0765 ABC-type amino acid transport system, permease component.
  0.992
EDZ46731.1
Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; [E] COG0765 ABC-type amino acid transport system, permease component.
 0.991
EDZ45895.1
Polar amino acid uptake family ABC transporter, permease protein; [E] COG0765 ABC-type amino acid transport system, permease component.
 
  0.969
EDZ45888.1
Polar amino acid uptake family ABC transporter, permease protein; [E] COG0765 ABC-type amino acid transport system, permease component.
  0.913
EDZ48412.1
Amino acid ABC transporter, ATP-binding protein; [P] COG1135 ABC-type metal ion transport system, ATPase component.
 
  0.899
EDZ47537.1
Glutamate/glutamine/aspartate/asparagine ABC transporter, ATP-binding protein; [E] COG1126 ABC-type polar amino acid transport system, ATPase component.
 
  0.890
RBY4I_909
[E] COG0765 ABC-type amino acid transport system, permease component.
 0.890
EDZ46759.1
[E] COG1126 ABC-type polar amino acid transport system, ATPase component.
 
  0.888
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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