STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phaZPolyhydroxyalkanoate depolymerase, intracellular; [I] COG4553 Poly-beta-hydroxyalkanoate depolymerase. (424 aa)    
Predicted Functional Partners:
phbC
Poly-beta-hydroxybutyrate polymerase; [I] COG3243 Poly(3-hydroxyalkanoate) synthetase.
 
  
 0.988
phaP
Phasin, PhaP; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
   
 0.857
EDZ45849.1
Conserved hypothetical protein.
       0.785
EDZ46530.1
Polyhydroxyalkonate synthesis repressor, PhaR; [S] COG5394 Uncharacterized protein conserved in bacteria.
 
   
 0.770
EDZ46193.1
Polyhydroxyalkanoate depolymerase domain protein; [Q] COG3509 Poly(3-hydroxybutyrate) depolymerase.
 
  
 0.622
bdh_2
[IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
   
 0.519
clpX
ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
   
    0.504
phbB
acetoacetyl-CoA reductase; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
   
 0.476
RBY4I_370
[M] COG2825 Outer membrane protein.
  
     0.467
EDZ48195.1
Conserved hypothetical protein; [Q] COG3509 Poly(3-hydroxybutyrate) depolymerase.
     
 0.435
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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