STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_585Heparinase II/III family protein; [S] COG5360 Uncharacterized protein conserved in bacteria. (580 aa)    
Predicted Functional Partners:
purH
Bifunctional purine biosynthesis protein PurH; [F] COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful).
       0.778
lspA
Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
       0.754
EDZ46957.1
Conserved hypothetical protein; [J] COG1530 Ribonucleases G and E.
  
     0.740
EDZ47750.1
Fmu; [J] COG0144 tRNA and rRNA cytosine-C5-methylases; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
 
    0.703
EDZ45934.1
Conserved hypothetical protein.
 
     0.697
EDZ48766.1
OmpA/MotB; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
  
     0.645
RBY4I_370
[M] COG2825 Outer membrane protein.
  
     0.639
EDZ48310.1
Conserved hypothetical protein; [U] COG4961 Flp pilus assembly protein TadG.
  
    0.612
RBY4I_798
Nitrogen regulation protein NtrY; [T] COG0642 Signal transduction histidine kinase.
  
     0.612
RBY4I_327
Divergent polysaccharide deacetylase family; [L] COG2812 DNA polymerase III, gamma/tau subunits.
  
     0.589
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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