STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_587[S] COG5389 Uncharacterized protein conserved in bacteria. (143 aa)    
Predicted Functional Partners:
EDZ46453.1
Thiol:disulfide interchange protein, DsbA family; [O] COG1651 Protein-disulfide isomerase.
 
     0.852
mutY
A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs.
       0.634
EDZ46380.1
[L] COG1466 DNA polymerase III, delta subunit.
  
     0.588
EDZ47141.1
Conserved hypothetical protein.
  
     0.581
EDZ45844.1
[S] COG5468 Predicted secreted (periplasmic) protein.
  
     0.579
EDZ47232.1
ATPase; [L] COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member.
  
     0.578
EDZ46939.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.575
EDZ47253.1
Fatty acid desaturase family protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.550
EDZ46077.1
[S] COG1426 Uncharacterized protein conserved in bacteria.
  
     0.534
EDZ46662.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.519
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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