STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RBY4I_588[S] COG3246 Uncharacterized conserved protein. (276 aa)    
Predicted Functional Partners:
pcaG
[Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit.
 
     0.829
pcaH
[Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit.
 
     0.808
pcaC
4-carboxymuconolactone decarboxylase; [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit.
    
  0.796
pcaQ
Pca operon transcription factor PcaQ; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.595
EDZ48235.1
Cyclase family protein; [R] COG1878 Predicted metal-dependent hydrolase.
  
    0.579
lcdH
3-hydroxyacyl-CoA dehydrogenase, NAD-binding; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
 
 0.533
dxnG
[I] COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit.
    
 0.526
dxnH
[I] COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit.
    
 0.516
EDZ46080.1
[C] COG1454 Alcohol dehydrogenase, class IV.
    
  0.496
pcaD
3-oxoadipate enol-lactonase; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
  
  0.443
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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