STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_592ErfK/YbiS/YcfS/YnhG; [S] COG1376 Uncharacterized protein conserved in bacteria. (200 aa)    
Predicted Functional Partners:
RBY4I_691
ErfK/YbiS/YcfS/YnhG family protein; [S] COG3034 Uncharacterized protein conserved in bacteria.
 
  
 0.725
EDZ47628.1
ErfK/YbiS/YcfS/YnhG family protein; [S] COG3034 Uncharacterized protein conserved in bacteria.
 
  
 0.702
EDZ48274.1
[R] COG5342 Invasion protein B, involved in pathogenesis.
  
     0.559
RBY4I_445
Allergen V5/Tpx-1 family protein; [S] COG2340 Uncharacterized protein with SCP/PR1 domains.
 
   
 0.549
mepA
Peptidoglycan amidase MepA; [M] COG3770 Murein endopeptidase.
  
     0.542
EDZ47436.1
Conserved hypothetical protein.
  
     0.490
EDZ46443.1
[I] COG3239 Fatty acid desaturase.
       0.475
EDZ47075.1
Conserved hypothetical protein.
  
     0.471
EDZ46568.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.443
EDZ48662.1
KR domain family; [IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase.
      
 0.412
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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