STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_6[R] COG3871 Uncharacterized stress protein (general stress protein 26). (171 aa)    
Predicted Functional Partners:
RBY4I_31
CsbD-like superfamily; [S] COG3237 Uncharacterized protein conserved in bacteria; Belongs to the UPF0337 (CsbD) family.
 
    0.901
RBY4I_79
[T] COG3920 Signal transduction histidine kinase.
  
     0.685
EDZ46915.1
[T] COG3920 Signal transduction histidine kinase.
  
     0.542
EDZ46801.1
Dimethylargininase; [E] COG1834 N-Dimethylarginine dimethylaminohydrolase.
   
    0.529
EDZ46631.1
Ribonuclease BN; [S] COG1295 Predicted membrane protein.
 
    0.514
RBY4I_39
[M] COG0668 Small-conductance mechanosensitive channel.
 
    0.511
RBY4I_560
[H] COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase.
     
  0.506
EDZ44970.1
Cyanobacterial phytochrome B, putative; [T] COG0642 Signal transduction histidine kinase.
  
     0.500
RBY4I_775
[R] COG0693 Putative intracellular protease/amidase.
 
    0.472
EDZ47462.1
Crp-Fnr family transciptional regulator; [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.
  
     0.466
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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