Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RBY4I_60[G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily. (365 aa)    
Predicted Functional Partners:
RBY4I_11
[G] COG1175 ABC-type sugar transport systems, permease components; overlaps another CDS with the same product name.
 
 0.997
RBY4I_1
Extracellular solute-binding protein, family 1; [G] COG1653 ABC-type sugar transport system, periplasmic component.
 
 0.994
RBY4I_34
Binding-protein-dependent transport systems inner membrane component; [G] COG0395 ABC-type sugar transport system, permease component; overlaps another CDS with the same product name.
 
 0.993
ugpA
SN-glycerol-3-phosphate ABC transporter, permease protein; [G] COG1175 ABC-type sugar transport systems, permease components.
 
 0.982
RBY4I_305
[G] COG1175 ABC-type sugar transport systems, permease components.
 
 0.970
ugpB
SN-glycerol-3-phophate ABC transporter, periplasmic SN-glycerol-3-phosphate-binding protein; [G] COG1653 ABC-type sugar transport system, periplasmic component.
 
 0.967
ugpE
SN-glycerol-3-phosphate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 0.966
modB
Molybdate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
   
  0.955
EDZ46063.1
Binding-protein-dependent transport systems inner membrane component; [G] COG0395 ABC-type sugar transport system, permease component.
 
 0.938
EDZ48479.1
Bacterial extracellular solute-binding protein, putative; [G] COG1653 ABC-type sugar transport system, periplasmic component.
  
 0.938
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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