STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RBY4I_604Peptidase M23B; [D] COG4942 Membrane-bound metallopeptidase. (377 aa)    
Predicted Functional Partners:
EDZ46136.1
[D] COG2177 Cell division protein.
 
 
 
 0.972
ctpA
Peptidase family S41; [R] COG3975 Predicted protease with the C-terminal PDZ domain; Belongs to the peptidase S41A family.
  
  
 0.929
EDZ47337.1
N-acetylmuramoyl-L-alanine amidase, family 3; [M] COG0860 N-acetylmuramoyl-L-alanine amidase.
 
 
 
 0.926
ftsE
Cell division ATP-binding protein FtsE; [E] COG1126 ABC-type polar amino acid transport system, ATPase component.
 
 
 
 0.926
gpmI
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
       0.831
EDZ48028.1
MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; [T] COG2202 FOG: PAS/PAC domain.
    
 0.815
EDZ46337.1
HWE histidine kinase family; [T] COG2202 FOG: PAS/PAC domain.
    
 0.808
mcpE
[NT] COG0840 Methyl-accepting chemotaxis protein.
     
  0.756
EDZ45802.1
[T] COG0642 Signal transduction histidine kinase.
     
  0.742
EDZ46648.1
[T] COG0642 Signal transduction histidine kinase.
     
  0.742
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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