STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_605Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (67 aa)    
Predicted Functional Partners:
EDZ47989.1
ATP:cob(I)alamin adenosyltransferase; [S] COG2096 Uncharacterized conserved protein; Belongs to the Cob(I)alamin adenosyltransferase family.
  
    0.834
EDZ47626.1
Conserved hypothetical protein.
  
     0.717
RBY4I_381
Signal transduction histidine kinase regulating citrate/malate metabolism.
  
     0.690
RBY4I_924
Short-chain dehydrogenase/reductase SDR; [R] COG4221 Short-chain alcohol dehydrogenase of unknown specificity; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.678
phaP
Phasin, PhaP; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.631
EDZ47327.1
Conserved hypothetical protein; [S] COG5488 Integral membrane protein.
  
     0.618
RBY4I_416
Hypothetical protein.
       0.610
EDZ47369.1
[IQ] COG0236 Acyl carrier protein; phosphopantetheine-binding.
  
     0.558
etfA
[C] COG2025 Electron transfer flavoprotein, alpha subunit.
       0.528
etfB
[C] COG2086 Electron transfer flavoprotein, beta subunit.
       0.527
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.