STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
RBY4I_609Type II secretion system protein; [NU] COG2064 Flp pilus assembly protein TadC. (322 aa)    
Predicted Functional Partners:
EDZ47668.1
Type II/IV secretion system protein, TadC subfamily; [NU] COG2064 Flp pilus assembly protein TadC.
 
 
0.999
EDZ48203.1
[NU] COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
 
 0.998
RBY4I_855
Response regulator receiver protein; [D] COG0489 ATPases involved in chromosome partitioning.
 
 
 0.998
cpaB
[U] COG3745 Flp pilus assembly protein CpaB.
 
 
 0.995
EDZ47831.1
Bacterial type II/III secretion system protein; [NU] COG1450 Type II secretory pathway, component PulD; Belongs to the bacterial secretin family.
 
 
 0.988
EDZ47907.1
Hypothetical protein.
 
 
 0.974
RBY4I_679
Hypothetical protein.
 
 
 0.967
EDZ47756.1
Peptidase A24A, prepilin type IV; [OU] COG4960 Flp pilus assembly protein, protease CpaA.
 
  
 0.964
RBY4I_561
AAA+ class ATPase; [O] COG0606 Predicted ATPase with chaperone activity.
 
    0.923
EDZ45996.1
TadE-like protein; [U] COG4961 Flp pilus assembly protein TadG.
 
  
 0.901
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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