STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_616Transcriptional regulator, GntR family; [K] COG1802 Transcriptional regulators. (241 aa)    
Predicted Functional Partners:
EDZ46244.1
ABC transporter, periplasmic substrate-binding protein, putative; [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
  
     0.774
RBY4I_806
ABC transporter, periplasmic substrate-binding protein, putative; [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
  
     0.770
RBY4I_718
Ammonium transporter family protein; [P] COG0004 Ammonia permease.
  
     0.714
EDZ47940.1
Aminomethyltransferase; [E] COG0404 Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
  
     0.561
EDZ48196.1
Aminotransferase, putative; [E] COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase.
  
     0.489
EDZ48737.1
Nitrate/nitrite response regulator protein, putative; [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
  
    0.477
EDZ47743.1
Glycine cleavage T-protein (aminomethyl transferase); [S] COG3665 Uncharacterized conserved protein; Belongs to the GcvT family.
  
     0.472
EDZ48662.1
KR domain family; [IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase.
  
 
 0.469
EDZ47036.1
Transcriptional regulator, AraC family; [K] COG2207 AraC-type DNA-binding domain-containing proteins.
  
    0.454
RBY4I_717
Vanillate O-demethylase oxidoreductase; [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
  
  0.434
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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