STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
eutCEctoine utilization protein EutC; [E] COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog. (330 aa)    
Predicted Functional Partners:
eutB
Ectoine utilization protein EutB; [E] COG0031 Cysteine synthase.
 
 
 0.917
eutD
Ectoine utilization protein EutD; [E] COG0006 Xaa-Pro aminopeptidase.
 
     0.881
RBY4I_756
Proline dehydrogenase family; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
 
 0.849
eutE
Ectoine utilization protein EutE; [R] COG3608 Predicted deacylase.
 
     0.821
eutA
Ectoine utilization protein EutA; [Q] COG3473 Maleate cis-trans isomerase.
 
     0.792
RBY4I_28
Trap dicarboxylate transporter, dctq subunit; [G] COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.778
RBY4I_61
Transcriptional regulator, AsnC family; [K] COG1522 Transcriptional regulators.
 
     0.752
EDZ46368.1
[E] COG3938 Proline racemase; Belongs to the proline racemase family.
 
  
 0.735
RBY4I_81
[T] COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
       0.728
RBY4I_26
Trap dicarboxylate transporter, dctm subunit; [R] COG4666 TRAP-type uncharacterized transport system, fused permease components.
       0.711
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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