STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RBY4I_620Exopolysaccharide biosynthesis domain protein; [D] COG0489 ATPases involved in chromosome partitioning. (331 aa)    
Predicted Functional Partners:
EDZ48350.1
UDP-galactose-lipid carrier transferase; [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
 
 
 0.943
EDZ46505.1
Lipopolysaccharide biosynthesis; [L] COG0419 ATPase involved in DNA repair.
 
 
 0.937
EDZ48662.1
KR domain family; [IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase.
 
  
 0.863
EDZ48349.1
Glycosyl transferase, family 2; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.
   
 0.832
EDZ47277.1
Polysaccharide biosynthesis protein; [R] COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.
 
  
 0.817
EDZ47515.1
[R] COG1216 Predicted glycosyltransferases.
 
   
 0.795
EDZ48369.1
Conserved hypothetical protein.
 
  
 0.772
EDZ47359.1
Luciferase-like monooxygenase family; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
   
 0.755
EDZ47093.1
Glycosyl transferase, group 1 family protein; [M] COG0438 Glycosyltransferase.
 
    0.745
RBY4I_962
Glycosyl transferase, group 2 family protein; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
    0.740
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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