rpmA protein (Rhodobacterales bacterium Y4I)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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Score

rpmA

[J] COG0211 Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. (89 aa)

Predicted Functional Partners:

rplU

0.999

rplM

0.996

rpsI

0.996

rplQ

0.996

rpsO

0.993

rplL

0.993

rplS

0.992

rplT

0.992

rplC

0.991

EDZ47474.1

0.990

Your Current Organism:

Rhodobacterales bacterium Y4I

NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDZ47474.1	rplC	RBY4I_2692	RBY4I_3493	[J] COG0227 Ribosomal protein L28.	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.991
EDZ47474.1	rplL	RBY4I_2692	RBY4I_2561	[J] COG0227 Ribosomal protein L28.	Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	0.985
EDZ47474.1	rplM	RBY4I_2692	RBY4I_1131	[J] COG0227 Ribosomal protein L28.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.989
EDZ47474.1	rplQ	RBY4I_2692	RBY4I_3567	[J] COG0227 Ribosomal protein L28.	[J] COG0203 Ribosomal protein L17.	0.984
EDZ47474.1	rplS	RBY4I_2692	RBY4I_3205	[J] COG0227 Ribosomal protein L28.	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.990
EDZ47474.1	rplT	RBY4I_2692	RBY4I_3899	[J] COG0227 Ribosomal protein L28.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.983
EDZ47474.1	rplU	RBY4I_2692	RBY4I_3551	[J] COG0227 Ribosomal protein L28.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.992
EDZ47474.1	rpmA	RBY4I_2692	RBY4I_626	[J] COG0227 Ribosomal protein L28.	[J] COG0211 Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.990
EDZ47474.1	rpsI	RBY4I_2692	RBY4I_3179	[J] COG0227 Ribosomal protein L28.	[J] COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.988
EDZ47474.1	rpsO	RBY4I_2692	RBY4I_1944	[J] COG0227 Ribosomal protein L28.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.993
rplC	EDZ47474.1	RBY4I_3493	RBY4I_2692	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	[J] COG0227 Ribosomal protein L28.	0.991
rplC	rplL	RBY4I_3493	RBY4I_2561	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	0.995
rplC	rplM	RBY4I_3493	RBY4I_1131	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.998
rplC	rplQ	RBY4I_3493	RBY4I_3567	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	[J] COG0203 Ribosomal protein L17.	0.996
rplC	rplS	RBY4I_3493	RBY4I_3205	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.991
rplC	rplT	RBY4I_3493	RBY4I_3899	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.993
rplC	rplU	RBY4I_3493	RBY4I_3551	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.993
rplC	rpmA	RBY4I_3493	RBY4I_626	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	[J] COG0211 Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.991
rplC	rpsI	RBY4I_3493	RBY4I_3179	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	[J] COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.995
rplC	rpsO	RBY4I_3493	RBY4I_1944	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.994