STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_628Transcriptional regulator, HxlR family; [K] COG1733 Predicted transcriptional regulators. (69 aa)    
Predicted Functional Partners:
EDZ46444.1
[QR] COG0500 SAM-dependent methyltransferases.
  
     0.692
EDZ47693.1
Glycosyl transferase, family 25; [M] COG3306 Glycosyltransferase involved in LPS biosynthesis.
  
     0.473
EDZ48029.1
Hypothetical protein.
       0.458
RBY4I_766
Phosphatidylethanolamine N-methyltransferase; [QR] COG0500 SAM-dependent methyltransferases.
  
     0.430
RBY4I_507
Outer membrane protein, OmpA/MotB family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.416
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.