STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sufBFeS assembly protein SufB; [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component. (507 aa)    
Predicted Functional Partners:
EDZ47526.1
SufBD; [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
0.999
RBY4I_862
[E] COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 0.989
EDZ47258.1
FeS assembly SUF system protein; [R] COG2151 Predicted metal-sulfur cluster biosynthetic enzyme.
   
 0.960
EDZ47708.1
Nitrogen-fixing NifU domain protein; [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
 
 0.942
nifS
[E] COG0520 Selenocysteine lyase.
  
 
 0.929
EDZ46508.1
[R] COG2166 SufE protein probably involved in Fe-S center assembly.
 
 
 0.915
EDZ46959.1
HesB/YadR/YfhF; [S] COG0316 Uncharacterized conserved protein; Belongs to the HesB/IscA family.
  
 0.856
EDZ47861.1
Hypothetical protein; [S] COG0393 Uncharacterized conserved protein; protein rhos4_20440; Belongs to the UPF0145 family.
  
  
 0.841
EDZ47646.1
Aromatic amino acid beta-eliminating lyase/threonine aldolase; [E] COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase.
 
 
 0.797
EDZ47473.1
[O] COG0695 Glutaredoxin and related proteins; Belongs to the glutaredoxin family. Monothiol subfamily.
     
 0.767
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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