STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_646Endoribonuclease L-PSP family protein; [J] COG0251 Putative translation initiation inhibitor, yjgF family. (132 aa)    
Predicted Functional Partners:
EDZ47125.1
Oxidoreductase, FAD/FMN-binding family; [HC] COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
 
    0.804
badA
Benzoate-coenzyme A ligase; [I] COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases.
 
 
  0.797
RBY4I_967
Transcriptional regulator, MarR family; [K] COG1846 Transcriptional regulators.
 
     0.781
EDZ46736.1
[I] COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
     0.773
EDZ48345.1
[I] COG1960 Acyl-CoA dehydrogenases.
  
 
   0.739
EDZ45816.1
[IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.633
RBY4I_887
Prenyltransferase family protein; [H] COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases; Belongs to the UbiA prenyltransferase family.
    
  0.545
EDZ47384.1
anti-ECFsigma factor, ChrR; [T] COG3806 Anti-sigma factor.
       0.542
tyrB
[E] COG1448 Aspartate/tyrosine/aromatic aminotransferase.
   
  0.525
tpiA
Triose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
  
   0.519
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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