STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
etfA[C] COG2025 Electron transfer flavoprotein, alpha subunit. (309 aa)    
Predicted Functional Partners:
etfB
[C] COG2086 Electron transfer flavoprotein, beta subunit.
 0.999
etf
Electrotransfer ubiquinone oxidoreductase protein; Accepts electrons from ETF and reduces ubiquinone.
 
 0.999
ivD
[I] COG1960 Acyl-CoA dehydrogenases.
 
 0.988
EDZ47554.1
acyl-CoA dehydrogenase family member 8; [I] COG1960 Acyl-CoA dehydrogenases.
 
 0.987
acdA
[I] COG1960 Acyl-CoA dehydrogenases.
 
 0.984
fadE
[I] COG1960 Acyl-CoA dehydrogenases.
 
 0.983
EDZ48113.1
Oxidoreductase, FAD/FMN-binding family; [O] COG0492 Thioredoxin reductase.
 
 0.979
EDZ48345.1
[I] COG1960 Acyl-CoA dehydrogenases.
 
 0.972
gcdH
[I] COG1960 Acyl-CoA dehydrogenases.
 
 0.958
EDZ47012.1
[I] COG1960 Acyl-CoA dehydrogenases.
 
 0.940
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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