STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_68Transcriptional regulator, GntR family; [E] COG0436 Aspartate/tyrosine/aromatic aminotransferase. (464 aa)    
Predicted Functional Partners:
EDZ48643.1
Hypothetical protein; [C] COG2218 Formylmethanofuran dehydrogenase subunit C; Conserved region in glutamate synthase family.
     
  0.761
gcvP_1
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
  0.560
gcvP_2
[E] COG1003 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain.
   
 
  0.560
RBY4I_75
Trap dicarboxylate transporter, dctp subunit; [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
       0.533
eutE
Ectoine utilization protein EutE; [R] COG3608 Predicted deacylase.
 
     0.525
RBY4I_28
Trap dicarboxylate transporter, dctq subunit; [G] COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.520
RBY4I_81
[T] COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
 
     0.517
RBY4I_36
Conserved hypothetical protein; [Q] COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
       0.514
eutA
Ectoine utilization protein EutA; [Q] COG3473 Maleate cis-trans isomerase.
 
     0.509
EDZ47743.1
Glycine cleavage T-protein (aminomethyl transferase); [S] COG3665 Uncharacterized conserved protein; Belongs to the GcvT family.
   
 
  0.507
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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