STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_680Metallopeptidase, family M24; [E] COG0006 Xaa-Pro aminopeptidase. (388 aa)    
Predicted Functional Partners:
EDZ47878.1
Asp/Glu/Hydantoin racemase family protein; [Q] COG3473 Maleate cis-trans isomerase.
 
     0.937
EDZ48615.1
Diaminopropionate ammonia-lyase; [E] COG1171 Threonine dehydratase.
 
     0.843
RBY4I_840
Amidohydrolase family protein; [R] COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase.
       0.775
eutA
Ectoine utilization protein EutA; [Q] COG3473 Maleate cis-trans isomerase.
 
     0.705
EDZ46299.1
Oxidoreductase, FAD/FMN-binding family; [R] COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
 
  
  0.634
RBY4I_929
Transcriptional regulator, TetR family; [K] COG1309 Transcriptional regulator.
  
     0.566
EDZ45988.1
Sarcosine oxidase, alpha subunit family; [E] COG0404 Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
  
 0.561
EDZ47679.1
Sarcosine oxidase, alpha subunit family; [R] COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; Belongs to the GcvT family.
  
 0.561
RBY4I_402
Sarcosine oxidase, alpha subunit family; [R] COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; Belongs to the GcvT family.
  
 0.561
RBY4I_938
[E] COG4583 Sarcosine oxidase gamma subunit.
  
  
  0.561
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.